X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Fphymltest.Rd;h=762aee18016b2d48a8c21118eb847bce6897bea4;hb=574e4a9ffc7503feb10351a268c0523912f6257e;hp=737beed1d5677bef35a72e275c952abec77d319f;hpb=285d0e6700c8381d66b5c671aacd9494fa8ad444;p=ape.git diff --git a/man/phymltest.Rd b/man/phymltest.Rd index 737beed..762aee1 100644 --- a/man/phymltest.Rd +++ b/man/phymltest.Rd @@ -37,7 +37,7 @@ phymltest(seqfile, format = "interleaved", itree = NULL, title).} \item{col}{a colour used for the segments showing the AIC values (blue by default).} - \item{...}{further arguments passed to or from other methods.} + \item{\dots}{further arguments passed to or from other methods.} } \description{ This function calls PhyML and fits successively 28 models of DNA @@ -45,7 +45,7 @@ phymltest(seqfile, format = "interleaved", itree = NULL, returned in R as a vector with the log-likelihood value of each model. } \details{ - The present function requires version 3.0 of PhyML; it won't work with + The present function requires version 3.0.1 of PhyML; it won't work with older versions. The user must take care to set correctly the three different paths @@ -115,7 +115,7 @@ phymltest(seqfile, format = "interleaved", itree = NULL, Guindon, S. and Gascuel, O. (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. \emph{Systematic Biology}, \bold{52}, 696--704. - \url{http://atgc.lirmm.fr/phyml/} + \url{http://www.atgc-montpellier.fr/phyml/} } \author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}} \seealso{