X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Ffastme.Rd;h=d29d305e851e1ebcb9b85b6f1925e0ecda609c7f;hb=50470fdeb74ae1e235e61ed6acfae81dd51f655c;hp=897ffa0942313637d415e880943f9ebac2abe5d7;hpb=d88302b4735b5b7c9132387090bb592d906fe1cb;p=ape.git

diff --git a/man/fastme.Rd b/man/fastme.Rd
index 897ffa0..d29d305 100644
--- a/man/fastme.Rd
+++ b/man/fastme.Rd
@@ -10,12 +10,14 @@
   Minimum Evolution algorithm of Desper and Gascuel (2002).
 }
 \usage{
-  fastme.bal(X, nni = TRUE)
+  fastme.bal(X, nni = TRUE, spr = TRUE, tbr = TRUE)
   fastme.ols(X, nni = TRUE)
 }
 \arguments{
   \item{X}{a distance matrix; may be an object of class \code{"dist"}.}
   \item{nni}{a boolean value; TRUE to do NNIs (default).}
+  \item{spr}{ditto for SPRs.}
+  \item{tbr}{ditto for TBRs.}
 }
 \value{
   an object of class \code{"phylo"}.
@@ -32,7 +34,7 @@
 \seealso{
   \code{\link{nj}}, \code{\link{bionj}},
   \code{\link{write.tree}}, \code{\link{read.tree}},
-  \code{\link{dist.dna}}, \code{\link{mlphylo}}
+  \code{\link{dist.dna}}
 }
 \examples{
 ### From Saitou and Nei (1987, Table 1):