X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Ffastme.Rd;h=794e6c84bc25596e59ccef4dfb4c87a5606a233b;hb=f3426364b40c7c0e6aadf6ea2690716425abdfc9;hp=897ffa0942313637d415e880943f9ebac2abe5d7;hpb=3f528bd2c47301b64ed03bd28039bbf22a7510ad;p=ape.git diff --git a/man/fastme.Rd b/man/fastme.Rd index 897ffa0..794e6c8 100644 --- a/man/fastme.Rd +++ b/man/fastme.Rd @@ -10,12 +10,14 @@ Minimum Evolution algorithm of Desper and Gascuel (2002). } \usage{ - fastme.bal(X, nni = TRUE) + fastme.bal(X, nni = TRUE, spr = TRUE, tbr = TRUE) fastme.ols(X, nni = TRUE) } \arguments{ \item{X}{a distance matrix; may be an object of class \code{"dist"}.} \item{nni}{a boolean value; TRUE to do NNIs (default).} + \item{spr}{ditto for SPRs.} + \item{tbr}{ditto for TBRs.} } \value{ an object of class \code{"phylo"}.