X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2FcorPagel.Rd;h=096a24844d61300d13e28e8697c1cde1fe4530fd;hb=40eeb40e48bccc220826860ce0ada4521cbc0148;hp=7248f65f25ef36afa1f43e88715b050a30aa9517;hpb=048cc125137aa5f9270ce02207ccaa8be02e53a8;p=ape.git diff --git a/man/corPagel.Rd b/man/corPagel.Rd index 7248f65..096a248 100644 --- a/man/corPagel.Rd +++ b/man/corPagel.Rd @@ -11,11 +11,11 @@ corPagel(value, phy, form = ~1, fixed = FALSE) } \arguments{ \item{value}{the (initial) value of the parameter - \eqn{\gamma}{gamma}.} + \eqn{\lambda}{lambda}.} \item{phy}{an object of class \code{"phylo"}.} \item{form}{(ignored).} \item{fixed}{a logical specifying whether \code{gls} should - estimate \eqn{\gamma}{gamma} (the default) or keep it fixed.} + estimate \eqn{\lambda}{lambda} (the default) or keep it fixed.} \item{object}{an (initialized) object of class \code{"corPagel"}.} \item{covariate}{(ignored).} \item{corr}{a logical value specifying whether to return the @@ -29,13 +29,13 @@ corPagel(value, phy, form = ~1, fixed = FALSE) \description{ The correlation structure from the present model is derived from the Brownian motion model by multiplying the off-diagonal elements (i.e., - the covariances) by \eqn{\gamma}{gamma}. The variances are thus the + the covariances) by \eqn{\lambda}{lambda}. The variances are thus the same than for a Brownian motion model. } \value{ an object of class \code{"corPagel"}, the coefficients from an object of this class, or the correlation matrix of an initialized object of - this class. In most situations, only \code{corPagel()} will be called + this class. In most situations, only \code{corPagel} will be called by the user. } \author{Emmanuel Paradis}