X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Fconsensus.Rd;h=2f7bdeb282018b18821a66d0958c90f8b1d59f37;hb=1f8c4f7bf4f7100178bd11f274247ae9fac1b876;hp=c99dd3622d9bcce047a762d0886c0421462d50fd;hpb=3f8df9b013dc4ed297c9b242cd833698ce7d015a;p=ape.git diff --git a/man/consensus.Rd b/man/consensus.Rd index c99dd36..2f7bdeb 100644 --- a/man/consensus.Rd +++ b/man/consensus.Rd @@ -2,10 +2,10 @@ \alias{consensus} \title{Concensus Trees} \usage{ -consensus(..., p = 1, check.labels = FALSE) +consensus(..., p = 1, check.labels = TRUE) } \arguments{ - \item{...}{either (i) a single object of class \code{"phylo"}, (ii) a + \item{\dots}{either (i) a single object of class \code{"phylo"}, (ii) a series of such objects separated by commas, or (iii) a list containing such objects.} \item{p}{a numeric value between 0.5 and 1 giving the proportion for a @@ -22,16 +22,16 @@ consensus(..., p = 1, check.labels = FALSE) 0.5 and 1 can be used. } \details{ - Using (the default) \code{check.labels = FALSE} results in - considerable decrease in computing times. This requires that (i) all - trees have the same tip labels, \emph{and} (ii) these labels are + Using \code{check.labels = FALSE} results in + considerable decrease in computing times. This requires that all + trees have the same tip labels, \emph{and} these labels are ordered similarly in all trees (in other words, the element \code{tip.label} are identical in all trees). } \value{ an object of class \code{"phylo"}. } -\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}} +\author{Emmanuel Paradis} \seealso{ \code{\link{prop.part}}, \code{\link{dist.topo}} }