X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Fboot.phylo.Rd;h=448a4d8ac0a4ad4fe7a176114b819883451db71f;hb=3f91879755fdbbe39cfd936495b2985fa4621615;hp=d46e0959a2ce8abe8d131766ae361cbed4e380fb;hpb=155d31f088ad9bd4074e5545c6a2dd48ab178788;p=ape.git diff --git a/man/boot.phylo.Rd b/man/boot.phylo.Rd index d46e095..448a4d8 100644 --- a/man/boot.phylo.Rd +++ b/man/boot.phylo.Rd @@ -44,7 +44,9 @@ prop.clades(phy, ..., part = NULL) These functions analyse bipartitions found in a series of trees. \code{prop.part} counts the number of bipartitions found in a series - of trees given as \code{\dots}. + of trees given as \code{\dots}. If a single tree is passed, the + returned object is a list of vectors with the tips descending from + each node (i.e., clade compositions indexed by node number). \code{prop.clades} counts the number of times the bipartitions present in \code{phy} are present in a series of trees given as \code{\dots} or @@ -111,7 +113,7 @@ prop.clades(phy, ..., part = NULL) Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. \emph{Evolution}, \bold{39}, 783--791. } -\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}} +\author{Emmanuel Paradis} \seealso{ \code{\link{dist.topo}}, \code{\link{consensus}}, \code{\link{nodelabels}} }