X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Fbd.time.Rd;h=11ab1d217426952ab911c4da510bf3f8fe759169;hb=a2fc961dffe9f9b7994ed880e68c03b2334dc341;hp=b33d8d05a1a0200ca2addcb90d2ea77bd5e58ed2;hpb=a8d86ed3981c64b6d20316d54d3ed4d02c2b887e;p=ape.git diff --git a/man/bd.time.Rd b/man/bd.time.Rd index b33d8d0..11ab1d2 100644 --- a/man/bd.time.Rd +++ b/man/bd.time.Rd @@ -35,7 +35,7 @@ bd.time(phy, birth, death, BIRTH = NULL, DEATH = NULL, primitives can be found in the help page of \code{\link{yule.time}}. The model is fitted by minimizing the least squares deviation between - the observed and predicted distributions of branching times. These + the observed and the predicted distributions of branching times. These computations rely heavily on numerical integrations. If \code{fast = FALSE}, integrations are done with R's \code{\link[stats]{integrate}} function. If \code{fast = TRUE}, a faster but less accurate function @@ -57,9 +57,9 @@ bd.time(phy, birth, death, BIRTH = NULL, DEATH = NULL, \item{evaluations}{id.} }} \references{ - Paradis, E. (2010) Time-dependent speciation and extinction from - phylogenies: a least squares approach. \emph{Evolution} (in press) - %, \bold{59}, 1--12. + Paradis, E. (2011) Time-dependent speciation and extinction from + phylogenies: a least squares approach. \emph{Evolution}, \bold{65}, + 661--672. } \author{Emmanuel Paradis} \seealso{