X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Fas.matching.Rd;h=29d665c5f3db1133c6b4b363b9f76275b53740e5;hb=46bc16a7531d871fccb6ea7c2a31d980aac21bd1;hp=9595688353647a0629d88058de5c5b2a84f6fc4e;hpb=c827059eeafc8cbe41c812b26979543ab287803e;p=ape.git diff --git a/man/as.matching.Rd b/man/as.matching.Rd index 9595688..29d665c 100644 --- a/man/as.matching.Rd +++ b/man/as.matching.Rd @@ -1,5 +1,6 @@ \name{as.matching} \alias{as.matching} +\alias{matching} \alias{as.matching.phylo} \alias{as.phylo.matching} \title{Conversion Between Phylo and Matching Objects} @@ -33,9 +34,8 @@ as.matching(x, ...) \code{as.matching} returns an object of class \code{"matching"} with the following component: - \item{matching}{a three-column numeric matrix where the first two - columns represent the sibling pairs, and the third one the - corresponding ancestor.} + \item{matching}{a two-column numeric matrix where the columns + represent the sibling pairs.} \item{tip.label}{(optional) a character vector giving the tip labels where the ith element is the label of the tip numbered i in \code{matching}.} @@ -49,7 +49,7 @@ as.matching(x, ...) \note{ Branch lengths are not supported in the present version. } -\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}} +\author{Emmanuel Paradis} \references{ Diaconis, P. W. and Holmes, S. P. (1998) Matchings and phylogenetic trees. \emph{Proceedings of the National Academy of Sciences USA},