X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=maligner.h;fp=maligner.h;h=6ddd6acebdff359294deda6b4cc1b4c2c5ae788f;hb=d8ed98e71c2da5b39b8a778e2c694a4ddff677eb;hp=a4c959bb480ae7035b3f74b1f76b5c833bd8138c;hpb=2b96bd74f70764a8b51436883afdc871fe826762;p=mothur.git

diff --git a/maligner.h b/maligner.h
index a4c959b..6ddd6ac 100644
--- a/maligner.h
+++ b/maligner.h
@@ -47,9 +47,10 @@ class Maligner {
 		
 		vector< vector<score_struct> > buildScoreMatrix(int, int);
 		void fillScoreMatrix(vector<vector<score_struct> >&, vector<Sequence*>, int);
-		vector<score_struct> extractHighestPath(vector<vector<score_struct> >);
+		vector<trace_struct> extractHighestPath(vector<vector<score_struct> >);
 		vector<trace_struct> mapTraceRegionsToAlignment(vector<score_struct>, vector<Sequence*>);
 		string constructChimericSeq(vector<trace_struct>, vector<Sequence*>);
+		string constructAntiChimericSeq(vector<trace_struct>, vector<Sequence*>);
 		float computePercentID(string, string);
 		string chimeraMaligner(int, DeCalculator*);
 		vector<Sequence*> getBlastSeqs(Sequence*, int);