X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=maligner.h;fp=maligner.h;h=4f5c949a45112ebed570f4f6df46cd60f1aeb23e;hb=3489799717f1f9002846bfd902d2886fc448f903;hp=da270d6ac10c2b43a5ee6100dd9e8c33ea5c71ae;hpb=d4c252e25cd7583b2582a8ada47063179ae29fba;p=mothur.git

diff --git a/maligner.h b/maligner.h
index da270d6..4f5c949 100644
--- a/maligner.h
+++ b/maligner.h
@@ -36,7 +36,7 @@ class Maligner {
 		float minDivR, percentIdenticalQueryChimera;
 		vector<results> outputResults;
 		map<int, int> spotMap;
-		
+		vector<int> unalignedMap;
 		vector<Sequence*> minCoverageFilter(vector<Sequence*>);  //removes top matches that do not have minimum coverage with query.
 		int computeChimeraPenalty();
 		void verticalFilter(vector<Sequence*>);