X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=maligner.cpp;fp=maligner.cpp;h=7d7145f4ca6bd9fac7a316745ace4432e4c26fe0;hb=77ac47e1ea0b5a0c6f55eb25e6bc7d7494ed3ad2;hp=5ea41fcd867d291fe928f096cb7d90e03d4d19d4;hpb=86c838c428a9e7d26f902f5492738241fa72c4e7;p=mothur.git

diff --git a/maligner.cpp b/maligner.cpp
index 5ea41fc..7d7145f 100644
--- a/maligner.cpp
+++ b/maligner.cpp
@@ -733,11 +733,13 @@ vector<Sequence*> Maligner::getBlastSeqs(Sequence* q, int num) {
 //cout << q->getName() << " merged results size = " << mergedResults.size() << '\t' << "numwanted = " << numWanted <<  endl;		
 		for (int i = 0; i < numWanted; i++) {
 //cout << db[mergedResults[i]]->getName()  << '\t' << mergedResults[i] << endl;	
-			//if (db[mergedResults[i]]->getName() != q->getName()) { 
+			
+			if (db[mergedResults[i]]->getName() != q->getName()) { 
 				Sequence* temp = new Sequence(db[mergedResults[i]]->getName(), db[mergedResults[i]]->getAligned());
 				refResults.push_back(temp);
 				indexes.push_back(mergedResults[i]);
-			//}
+			}
+			
 //cout << mergedResults[i] << endl;
 		}
 //cout << "done " << q->getName()  << endl;