X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=makegroupcommand.h;h=e0c709204a6be01c637bf3ada3fbdb73a8c7b3d8;hb=8dd3c225255d7084e3aff8740aa4f1f1cabb367a;hp=260deaa5637a580c24d6be89b1c8b822ba262591;hpb=8bc3e5b38c2317a1715f53be22fa96455868c281;p=mothur.git

diff --git a/makegroupcommand.h b/makegroupcommand.h
index 260deaa..e0c7092 100644
--- a/makegroupcommand.h
+++ b/makegroupcommand.h
@@ -17,20 +17,23 @@ class MakeGroupCommand : public Command {
 public:
 	MakeGroupCommand(string);
 	MakeGroupCommand();	
-	~MakeGroupCommand();
-	vector<string> getRequiredParameters();
-	vector<string> getValidParameters();
-	vector<string> getRequiredFiles();
-	map<string, vector<string> > getOutputFiles() { return outputTypes; }
+	~MakeGroupCommand(){}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "make.group";	}
+	string getCommandCategory()		{ return "General";		}
+	string getHelpString();	
+	string getCitation() { return "http://www.mothur.org/wiki/Make.group"; }
+	string getDescription()		{ return "creates a group file"; }
+
 	int execute(); 
-	void help();	
+	void help() { m->mothurOut(getHelpString()); }	
 	
 private:
 		
-	string fastaFileName, groups, outputDir, filename;
+	string fastaFileName, groups, outputDir, filename, output;
 	vector<string> fastaFileNames;
 	vector<string> groupsNames, outputNames;
-	map<string, vector<string> > outputTypes;
 	
 	bool abort;
 };