X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=makefile;h=ef5cfe7ebb9550c5b5fa275e128f1ff013585e33;hb=8ef6687c1f586285d01c000cc5e359bf9c07c717;hp=0c5adac54141a6864ab5cf2a1565f58e92aeab38;hpb=7837a9bfdfccdc26360987a44c389832fdb82651;p=mothur.git

diff --git a/makefile b/makefile
index 0c5adac..ef5cfe7 100644
--- a/makefile
+++ b/makefile
@@ -26,7 +26,7 @@ ifeq  ($(strip $(USEREADLINE)),yes)
       -L../readline-6.0
 endif
 
-USEMPI ?= yes
+USEMPI ?= no
 
 ifeq  ($(strip $(USEMPI)),yes)
 	CC = mpic++
@@ -153,6 +153,7 @@ mothur : \
 		./splitabundcommand.o\
 		./splitmatrix.o\
 		./clustersplitcommand.o\
+		./weightedlinkage.o\
 		./inputdata.o\
 		./jackknife.o\
 		./kmer.o\
@@ -224,6 +225,7 @@ mothur : \
 		./taxonomyequalizer.o\
 		./phylotypecommand.o\
 		./classifyseqscommand.o\
+		./classifyotucommand.o\
 		./parsesffcommand.o\
 		./classify.o\
 		./phylotree.o\
@@ -361,6 +363,7 @@ mothur : \
 		./splitabundcommand.o\
 		./splitmatrix.o\
 		./clustersplitcommand.o\
+		./weightedlinkage.o\
 		./inputdata.o\
 		./jackknife.o\
 		./kmer.o\
@@ -432,6 +435,7 @@ mothur : \
 		./taxonomyequalizer.o\
 		./phylotypecommand.o\
 		./classifyseqscommand.o\
+		./classifyotucommand.o\
 		./parsesffcommand.o\
 		./classify.o\
 		./phylotree.o\
@@ -459,7 +463,7 @@ mothur : \
 		./logsd.o\
 		./geom.o\
 		./setlogfilecommand.o\
-		-o ../Release/mothur
+		-o mothur
 
 clean : 
 		rm \
@@ -572,6 +576,7 @@ clean :
 		./splitabundcommand.o\
 		./splitmatrix.o\
 		./clustersplitcommand.o\
+		./weightedlinkage.o\
 		./inputdata.o\
 		./jackknife.o\
 		./kmer.o\
@@ -643,6 +648,7 @@ clean :
 		./taxonomyequalizer.o\
 		./phylotypecommand.o\
 		./classifyseqscommand.o\
+		./classifyotucommand.o\
 		./parsesffcommand.o\
 		./classify.o\
 		./phylotree.o\
@@ -1694,8 +1700,16 @@ install : mothur
 ./splitmatrix.o : splitmatrix.cpp
 	$(CC) $(CC_OPTIONS) splitmatrix.cpp -c $(INCLUDE) -o ./splitmatrix.o
 	
-# Item # 207 -- splitmatrix --
+# Item # 207 -- clustersplit --
 ./clustersplitcommand.o : clustersplitcommand.cpp
 	$(CC) $(CC_OPTIONS) clustersplitcommand.cpp -c $(INCLUDE) -o ./clustersplitcommand.o
+	
+# Item # 208 -- classifyotu --
+./classifyotucommand.o : classifyotucommand.cpp
+	$(CC) $(CC_OPTIONS) classifyotucommand.cpp -c $(INCLUDE) -o ./classifyotucommand.o
+
+# Item # 209 -- weightedlinkage --
+./weightedlinkage.o : weightedlinkage.cpp
+	$(CC) $(CC_OPTIONS) weightedlinkage.cpp -c $(INCLUDE) -o ./weightedlinkage.o
 
 ##### END RUN ####