X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=makefile;h=b7bb8d04798f870be5f84d925323b9a79be08ca4;hb=13193e6688c91b6a25e39d357caa7f4b4bf5de5f;hp=d62f0290e5c9dce0b4d8100a6e92940ccca2e1df;hpb=a61980e36d61937acccadc41be260165a1e389f4;p=mothur.git

diff --git a/makefile b/makefile
index d62f029..b7bb8d0 100644
--- a/makefile
+++ b/makefile
@@ -26,7 +26,8 @@ ifeq  ($(strip $(USEREADLINE)),yes)
       -L../readline-6.0
 endif
 
-USEMPI ?= yes
+USEMPI ?= no
+
 
 ifeq  ($(strip $(USEMPI)),yes)
     CC_OPTIONS += -DUSE_MPI
@@ -219,7 +220,8 @@ mothur : \
 		./parsesffcommand.o\
 		./classify.o\
 		./phylotree.o\
-		./bayesian.o\
+		./bayesian.o\
+		./phylosummary.o\
 		./alignmentdb.o\
 		./knn.o\
 		./distancedb.o\
@@ -238,7 +240,8 @@ mothur : \
 		./qstat.o\
 		./shen.o\
 		./logsd.o\
-		./geom.o
+		./geom.o\
+		./setlogfilecommand.o
 	$(CC) $(LNK_OPTIONS) \
 		./sharedutilities.o\
 		./treegroupscommand.o\
@@ -416,7 +419,8 @@ mothur : \
 		./parsesffcommand.o\
 		./classify.o\
 		./phylotree.o\
-		./bayesian.o\
+		./bayesian.o\
+		./phylosummary.o\
 		./alignmentdb.o\
 		./knn.o\
 		./distancedb.o\
@@ -435,7 +439,8 @@ mothur : \
 		./qstat.o\
 		./shen.o\
 		./logsd.o\
-		./geom.o\
+		./geom.o\
+		./setlogfilecommand.o\
 		-o ../Release/mothur
 
 clean : 
@@ -616,7 +621,8 @@ clean :
 		./parsesffcommand.o\
 		./classify.o\
 		./phylotree.o\
-		./bayesian.o\
+		./bayesian.o\
+		./phylosummary.o\
 		./alignmentdb.o\
 		./knn.o\
 		./distancedb.o\
@@ -635,7 +641,8 @@ clean :
 		./qstat.o\
 		./shen.o\
 		./logsd.o\
-		./geom.o\
+		./geom.o\
+		./setlogfilecommand.o\
 		mothur
 
 install : mothur
@@ -1619,6 +1626,15 @@ install : mothur
 # Item # 196 -- chimerabellerophoncommand --
 ./chimerabellerophoncommand.o : chimerabellerophoncommand.cpp
 	$(CC) $(CC_OPTIONS) chimerabellerophoncommand.cpp -c $(INCLUDE) -o ./chimerabellerophoncommand.o
+
+# Item # 197 -- phylosummary --
+./phylosummary.o : phylosummary.cpp
+	$(CC) $(CC_OPTIONS) phylosummary.cpp -c $(INCLUDE) -o ./phylosummary.o
+
+# Item # 198 -- setlogfilecommand --
+./setlogfilecommand.o : setlogfilecommand.cpp
+	$(CC) $(CC_OPTIONS) setlogfilecommand.cpp -c $(INCLUDE) -o ./setlogfilecommand.o
+
 
 
 ##### END RUN ####