X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=makefile;h=a868ec524c0366e2e942c4a57379b4248a619569;hb=7a7870ab773b993d8d1fd89703b1df3beb47f8d4;hp=181b897a16f87b1f5e1cd2689d4c1621dbeac3c1;hpb=84f93a9e670eb7f7e69e0468b9be4c53890c07f2;p=mothur.git

diff --git a/makefile b/makefile
index 181b897..a868ec5 100644
--- a/makefile
+++ b/makefile
@@ -26,7 +26,8 @@ ifeq  ($(strip $(USEREADLINE)),yes)
       -L../readline-6.0
 endif
 
-USEMPI ?= no
+USEMPI ?= no
+
 
 ifeq  ($(strip $(USEMPI)),yes)
     CC_OPTIONS += -DUSE_MPI
@@ -218,7 +219,9 @@ mothur : \
 		./classifyseqscommand.o\
 		./parsesffcommand.o\
 		./classify.o\
-		./phylotree.o\
+		./phylotree.o\
+		./phylodiversity.o\
+		./phylodiversitycommand.o\
 		./bayesian.o\
 		./phylosummary.o\
 		./alignmentdb.o\
@@ -417,7 +420,9 @@ mothur : \
 		./classifyseqscommand.o\
 		./parsesffcommand.o\
 		./classify.o\
-		./phylotree.o\
+		./phylotree.o\
+		./phylodiversity.o\
+		./phylodiversitycommand.o\
 		./bayesian.o\
 		./phylosummary.o\
 		./alignmentdb.o\
@@ -619,7 +624,9 @@ clean :
 		./classifyseqscommand.o\
 		./parsesffcommand.o\
 		./classify.o\
-		./phylotree.o\
+		./phylotree.o\
+		./phylodiversity.o\
+		./phylodiversitycommand.o\
 		./bayesian.o\
 		./phylosummary.o\
 		./alignmentdb.o\
@@ -1634,6 +1641,14 @@ install : mothur
 ./setlogfilecommand.o : setlogfilecommand.cpp
 	$(CC) $(CC_OPTIONS) setlogfilecommand.cpp -c $(INCLUDE) -o ./setlogfilecommand.o
 
+# Item # 199 -- phylodiversity --
+./phylodiversity.o : phylodiversity.cpp
+	$(CC) $(CC_OPTIONS) phylodiversity.cpp -c $(INCLUDE) -o ./phylodiversity.o
+
+# Item # 200 -- phylodiversitycommand --
+./phylodiversitycommand.o : phylodiversitycommand.cpp
+	$(CC) $(CC_OPTIONS) phylodiversitycommand.cpp -c $(INCLUDE) -o ./phylodiversitycommand.o
+
 
 
 ##### END RUN ####