X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=makefile;h=8ea410e02545278774c6b5f922c8ac40f68f946e;hb=dfae916a398508554d35c6b3c8002b69becb53be;hp=af46fd97ab6bcd26392de438592e9d03678f3948;hpb=bc4c4d63e983a3e91e74b5038bfec6705e1a3a2e;p=mothur.git

diff --git a/makefile b/makefile
index af46fd9..8ea410e 100644
--- a/makefile
+++ b/makefile
@@ -17,13 +17,17 @@ CYGWIN_BUILD ?= no
 ifeq  ($(strip $(CYGWIN_BUILD)),yes)
     CXXFLAGS += -mno-cygwin
     LDFLAGS += -mno-cygwin 
-#-lpsapi
 endif
 
 64BIT_VERSION ?= yes
 
 ifeq  ($(strip $(64BIT_VERSION)),yes)
     TARGET_ARCH += -arch x86_64
+	 CXXFLAGS += -DBIT_VERSION
+	
+	#if you are using centos uncomment the following lines
+	#CC = g++44
+	#CXXFLAGS += -mtune=native -march=native -m64
 endif
 
 # if you do not want to use the readline library, set this to no.
@@ -35,8 +39,7 @@ ifeq  ($(strip $(USEREADLINE)),yes)
     CXXFLAGS += -DUSE_READLINE
     LDFLAGS += \
       -lreadline\
-      -lncurses\
-      -L../readline-6.0
+      -lncurses
 endif
 
 USEMPI ?= no
@@ -64,6 +67,12 @@ mothur : $(OBJECTS)
 install : mothur
 	cp mothur ../Release/mothur
 
+%.o : %.cpp %.h
+	$(COMPILE.cpp) $(OUTPUT_OPTION) $<
+%.o : %.cpp %.hpp
+	$(COMPILE.cpp) $(OUTPUT_OPTION) $<
+
+
 clean :
 	@rm -f $(OBJECTS)