X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=makefile;h=181b897a16f87b1f5e1cd2689d4c1621dbeac3c1;hb=84f93a9e670eb7f7e69e0468b9be4c53890c07f2;hp=451d613a24d3e91dd025f6f584f63f9ec5a2404a;hpb=e189982e0a9b7352ad57cc38ccee675f128be22e;p=mothur.git

diff --git a/makefile b/makefile
index 451d613..181b897 100644
--- a/makefile
+++ b/makefile
@@ -2,7 +2,7 @@
 #
 # Makefile for mothur
 # Creator [Xcode -> Makefile Ver: Feb 14 2007 09:18:41]
-# Created: [Thu Mar  4 08:31:03 2010]
+# Created: April 16, 2010
 #
 ###################################################
 
@@ -12,7 +12,6 @@
 
 CC = mpic++
 CC_OPTIONS = -O3
-LNK_OPTIONS = 
 
 # if you do not want to use the readline library set to no, default yes.
 # make sure you have the library installed
@@ -220,7 +219,8 @@ mothur : \
 		./parsesffcommand.o\
 		./classify.o\
 		./phylotree.o\
-		./bayesian.o\
+		./bayesian.o\
+		./phylosummary.o\
 		./alignmentdb.o\
 		./knn.o\
 		./distancedb.o\
@@ -239,7 +239,8 @@ mothur : \
 		./qstat.o\
 		./shen.o\
 		./logsd.o\
-		./geom.o
+		./geom.o\
+		./setlogfilecommand.o
 	$(CC) $(LNK_OPTIONS) \
 		./sharedutilities.o\
 		./treegroupscommand.o\
@@ -417,7 +418,8 @@ mothur : \
 		./parsesffcommand.o\
 		./classify.o\
 		./phylotree.o\
-		./bayesian.o\
+		./bayesian.o\
+		./phylosummary.o\
 		./alignmentdb.o\
 		./knn.o\
 		./distancedb.o\
@@ -436,7 +438,8 @@ mothur : \
 		./qstat.o\
 		./shen.o\
 		./logsd.o\
-		./geom.o\
+		./geom.o\
+		./setlogfilecommand.o\
 		-o ../Release/mothur
 
 clean : 
@@ -617,7 +620,8 @@ clean :
 		./parsesffcommand.o\
 		./classify.o\
 		./phylotree.o\
-		./bayesian.o\
+		./bayesian.o\
+		./phylosummary.o\
 		./alignmentdb.o\
 		./knn.o\
 		./distancedb.o\
@@ -636,7 +640,8 @@ clean :
 		./qstat.o\
 		./shen.o\
 		./logsd.o\
-		./geom.o\
+		./geom.o\
+		./setlogfilecommand.o\
 		mothur
 
 install : mothur
@@ -1620,6 +1625,15 @@ install : mothur
 # Item # 196 -- chimerabellerophoncommand --
 ./chimerabellerophoncommand.o : chimerabellerophoncommand.cpp
 	$(CC) $(CC_OPTIONS) chimerabellerophoncommand.cpp -c $(INCLUDE) -o ./chimerabellerophoncommand.o
+
+# Item # 197 -- phylosummary --
+./phylosummary.o : phylosummary.cpp
+	$(CC) $(CC_OPTIONS) phylosummary.cpp -c $(INCLUDE) -o ./phylosummary.o
+
+# Item # 198 -- setlogfilecommand --
+./setlogfilecommand.o : setlogfilecommand.cpp
+	$(CC) $(CC_OPTIONS) setlogfilecommand.cpp -c $(INCLUDE) -o ./setlogfilecommand.o
+
 
 
 ##### END RUN ####