X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=makefastqcommand.h;h=e3e0b70b087b17e5d6299052cb06567e9b7c9f69;hb=6b32d112bb60e9f7eb6d4407a4eed4c49b67bced;hp=9119ebd50c4c9362e73a72902b888d4f1d06b887;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96;p=mothur.git

diff --git a/makefastqcommand.h b/makefastqcommand.h
index 9119ebd..e3e0b70 100644
--- a/makefastqcommand.h
+++ b/makefastqcommand.h
@@ -24,8 +24,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "make.fastq";				}
 	string getCommandCategory()		{ return "Sequence Processing";		}
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Make.fastq"; }
 	string getDescription()		{ return "creates a fastq file from a fasta and quality file"; }
 
@@ -36,7 +37,7 @@ public:
 	
 private:
 	
-	string fastafile, qualfile, outputDir;
+	string fastafile, qualfile, outputDir, format;
 	bool abort;
 	vector<string> outputNames;