X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=makefastqcommand.h;h=e3e0b70b087b17e5d6299052cb06567e9b7c9f69;hb=250e3b11b1c9c1e1ad458ab6c7e71ac2e67e11d9;hp=1c209aab392f82a06ec5bce2d92811e20286df69;hpb=a44542a3c740cf957cff72ac71742f2fe48b0eaf;p=mothur.git

diff --git a/makefastqcommand.h b/makefastqcommand.h
index 1c209aa..e3e0b70 100644
--- a/makefastqcommand.h
+++ b/makefastqcommand.h
@@ -24,7 +24,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "make.fastq";				}
 	string getCommandCategory()		{ return "Sequence Processing";		}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Make.fastq"; }
 	string getDescription()		{ return "creates a fastq file from a fasta and quality file"; }
 
@@ -35,7 +37,7 @@ public:
 	
 private:
 	
-	string fastafile, qualfile, outputDir;
+	string fastafile, qualfile, outputDir, format;
 	bool abort;
 	vector<string> outputNames;