X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=listvector.hpp;h=dcf01a0ad4b356f152a3cf8ca168a6ba528b63bb;hb=a0f1fca79d2ddfa7ad36b4485039c68b5704fe8d;hp=dbd61cd0d8f10cba4ea87b4075bbec673f36b19b;hpb=20a2d0350a737a434c89f303662d64a8eeea7b05;p=mothur.git

diff --git a/listvector.hpp b/listvector.hpp
index dbd61cd..dcf01a0 100644
--- a/listvector.hpp
+++ b/listvector.hpp
@@ -2,12 +2,16 @@
 #define LIST_H
 
 #include "datavector.hpp"
-#include "groupmap.h"
-#include "globaldata.hpp"
-#include "sharedordervector.h"
-#include <iostream>
-#include <map>
 
+/*	DataStructure for a list file.
+	This class is a child to datavector.  It represents OTU information at a certain distance. 
+	A list vector can be converted into and ordervector, rabundvector or sabundvector.
+	Each member of the internal container "data" represents an individual OTU.
+	So data[0] = "a,b,c,d,e,f".
+	example: listvector		=	a,b,c,d,e,f		g,h,i		j,k		l		m  
+			 rabundvector	=	6				3			2		1		1
+			 sabundvector	=	2		1		1		0		0		1
+			 ordervector	=	1	1	1	1	1	1	2	2	2	3	3	4	5 */
 
 class ListVector : public DataVector {
 	
@@ -35,12 +39,9 @@ public:
 	RAbundVector getRAbundVector();
 	SAbundVector getSAbundVector();
 	OrderVector getOrderVector(map<string,int>*);
-	SharedOrderVector* getSharedOrderVector();
 	
 private:
-	vector<string> data;
-	GlobalData* globaldata;
-	GroupMap* groupmap;
+	vector<string> data;  //data[i] is a list of names of sequences in the ith OTU.
 	int maxRank;
 	int numBins;
 	int numSeqs;