X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=listseqscommand.h;h=8e4cce3c932100ff1ab88d49b346ff87e7791a06;hb=cc19310422f125d6628980bd1148e1e816792382;hp=f814d8487d81fc98e98f2245ee13c5564ec5424b;hpb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;p=mothur.git

diff --git a/listseqscommand.h b/listseqscommand.h
index f814d84..8e4cce3 100644
--- a/listseqscommand.h
+++ b/listseqscommand.h
@@ -23,7 +23,8 @@ class ListSeqsCommand : public Command {
 		vector<string> setParameters();
 		string getCommandName()			{ return "list.seqs";				}
 		string getCommandCategory()		{ return "Sequence Processing";		}
-		string getHelpString();	
+		string getOutputFileNameTag(string, string);
+	string getHelpString();	
 		string getCitation() { return "http://www.mothur.org/wiki/List.seqs"; }
 		string getDescription()		{ return "lists sequences from a list, fasta, name, group, alignreport or taxonomy file"; }
 
@@ -33,7 +34,7 @@ class ListSeqsCommand : public Command {
 	
 	private:
 		vector<string> names, outputNames;
-		string fastafile, namefile, groupfile, alignfile, inputFileName, outputDir, listfile, taxfile;
+		string fastafile, namefile, groupfile, countfile, alignfile, inputFileName, outputDir, listfile, taxfile;
 		bool abort;
 		
 		int readFasta();
@@ -42,6 +43,7 @@ class ListSeqsCommand : public Command {
 		int readAlign();
 		int readList();
 		int readTax();
+        int readCount();
 		
 };