X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=linearalgebra.h;h=58a60dae8f04d9eae12fff9f8d729cc2119d4c92;hb=f0a594f6676ef5a52d1f122b6de70de2fda08c81;hp=70f7699b138e06a4fbf50bfde9e4c6df0e2e3831;hpb=d04f948b1a2a1a2984fc4a45d04403b8c121c5bc;p=mothur.git

diff --git a/linearalgebra.h b/linearalgebra.h
index 70f7699..58a60da 100644
--- a/linearalgebra.h
+++ b/linearalgebra.h
@@ -12,6 +12,7 @@
 
 #include "mothurout.h"
 
+
 class LinearAlgebra {
 	
 public:
@@ -19,12 +20,16 @@ public:
 	~LinearAlgebra() {}
 	
 	vector<vector<double> > matrix_mult(vector<vector<double> >, vector<vector<double> >);
+	void recenter(double, vector<vector<double> >, vector<vector<double> >&);
 	int tred2(vector<vector<double> >&, vector<double>&, vector<double>&);
 	int qtli(vector<double>&, vector<double>&, vector<vector<double> >&);
 	vector< vector<double> > calculateEuclidianDistance(vector<vector<double> >&, int); //pass in axes and number of dimensions
 	vector< vector<double> > calculateEuclidianDistance(vector<vector<double> >&); //pass in axes
+	vector<vector<double> > getObservedEuclideanDistance(vector<vector<double> >&);
 	double calcPearson(vector<vector<double> >&, vector<vector<double> >&);
-	
+	double calcSpearman(vector<vector<double> >&, vector<vector<double> >&);
+	double calcKendall(vector<vector<double> >&, vector<vector<double> >&);
+
 private:
 	MothurOut* m;