X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=libshuffcommand.h;h=81ae17ab644287e75a2de30f88427a67937b549d;hb=28bcfc4a41b8b82f66636587e0d4d355d07cbdd1;hp=97fcd1cce71290949fde06e96086ab0cc48db70b;hpb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;p=mothur.git

diff --git a/libshuffcommand.h b/libshuffcommand.h
index 97fcd1c..81ae17a 100644
--- a/libshuffcommand.h
+++ b/libshuffcommand.h
@@ -26,8 +26,11 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "libshuff";				}
 	string getCommandCategory()		{ return "Hypothesis Testing";		}
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
-	
+	string getCitation() { return "Singleton DR, Furlong MA, Rathbun SL, Whitman WB (2001). Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl Environ Microbiol 67: 4374-6. \nSchloss PD, Larget BR, Handelsman J (2004). Integration of microbial ecology and statistics: a test to compare gene libraries. Appl Environ Microbiol 70: 5485-92. \nhttp://www.mothur.org/wiki/Libshuff"; }
+	string getDescription()		{ return "a generic test that describes whether two or more communities have the same structure using the Cramer-von Mises test statistic"; }
+
 	int execute();
 	void help() { m->mothurOut(getHelpString()); }