X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=libshuffcommand.h;h=465a67f02d2858b86e8f79761c7f141813be185c;hb=2bb9267aa4b4ecdf8488b06605cc9f3f36fa4332;hp=25b128157b7fb6ba9a3382542cf353bd2ab74473;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git diff --git a/libshuffcommand.h b/libshuffcommand.h index 25b1281..465a67f 100644 --- a/libshuffcommand.h +++ b/libshuffcommand.h @@ -27,8 +27,9 @@ public: string getCommandName() { return "libshuff"; } string getCommandCategory() { return "Hypothesis Testing"; } string getHelpString(); - string getCitation() { return "http://www.mothur.org/wiki/Libshuff"; } - + string getCitation() { return "Singleton DR, Furlong MA, Rathbun SL, Whitman WB (2001). Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl Environ Microbiol 67: 4374-6. \nSchloss PD, Larget BR, Handelsman J (2004). Integration of microbial ecology and statistics: a test to compare gene libraries. Appl Environ Microbiol 70: 5485-92. \nhttp://www.mothur.org/wiki/Libshuff"; } + string getDescription() { return "a generic test that describes whether two or more communities have the same structure using the Cramer-von Mises test statistic"; } + int execute(); void help() { m->mothurOut(getHelpString()); }