X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=libshuffcommand.cpp;h=e7fb357b9bd3028fcbd32bf388af9bbb9b4c2847;hb=134a9c1275862a6b3ea10a2c0f11965c0a535854;hp=e48cf33d7dd4a60405841e124a35c5250f76bd86;hpb=8bc3e5b38c2317a1715f53be22fa96455868c281;p=mothur.git

diff --git a/libshuffcommand.cpp b/libshuffcommand.cpp
index e48cf33..e7fb357 100644
--- a/libshuffcommand.cpp
+++ b/libshuffcommand.cpp
@@ -33,6 +33,7 @@ vector<string> LibShuffCommand::getValidParameters(){
 //**********************************************************************************************************************
 LibShuffCommand::LibShuffCommand(){	
 	try {
+		abort = true;
 		//initialize outputTypes
 		vector<string> tempOutNames;
 		outputTypes["coverage"] = tempOutNames;