X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=kruskalwalliscommand.h;fp=kruskalwalliscommand.h;h=7e526137bc42daa1928c7e0988e1b52d546dbf2a;hb=013ef8f1507c29ef442e47eb3538ecdd1ef6ddef;hp=0000000000000000000000000000000000000000;hpb=2aa152a03b9efe77ecfbbd4e0e8e128f74724cc1;p=mothur.git

diff --git a/kruskalwalliscommand.h b/kruskalwalliscommand.h
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+++ b/kruskalwalliscommand.h
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+/* 
+ * File:   kruskalwalliscommand.h
+ * Author: kiverson
+ *
+ * Created on June 26, 2012, 11:07 AM
+ */
+
+#ifndef KRUSKALWALLISCOMMAND_H
+#define	KRUSKALWALLISCOMMAND_H
+
+#include "command.hpp"
+
+class KruskalWallisCommand : public Command {
+
+public:
+	
+	KruskalWallisCommand(string);	
+	KruskalWallisCommand();
+	~KruskalWallisCommand(){}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "kruskalwallis";			}
+	string getCommandCategory()		{ return "Hypothesis Testing";	}
+	string getOutputFileNameTag(string, string);
+	string getHelpString();	
+	string getCitation() { return "http://www.mothur.org/wiki/kruskalwallis"; }
+	string getDescription()		{ return "Non-parametric method for testing whether samples originate from the same distribution."; }
+    
+    int execute(); 
+	void help() { m->mothurOut(getHelpString()); }
+    multimap<double,double> getRank(vector<KruskalWallisCommand::groupRank>);
+    
+private:
+    string outputDir;
+    vector<int> counts;
+    vector<double> rankSums;
+    vector<double> rankMeans;
+    
+};
+
+#endif	/* KRUSKALWALLISCOMMAND_H */
+