X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=kmerdb.hpp;h=4ae00b91311677488c35961186dfbf072ba005f3;hb=2bb9267aa4b4ecdf8488b06605cc9f3f36fa4332;hp=513f3f07d64bbd267e11bd16777fae5aadb97a5c;hpb=fdc1f6eaf544f695fc1511f24bddd7e6069c33ba;p=mothur.git

diff --git a/kmerdb.hpp b/kmerdb.hpp
index 513f3f0..4ae00b9 100644
--- a/kmerdb.hpp
+++ b/kmerdb.hpp
@@ -26,6 +26,7 @@ class KmerDB : public Database {
 	
 public:
 	KmerDB(string, int);
+	KmerDB(const KmerDB& kdb) : kmerSize(kdb.kmerSize), maxKmer(kdb.maxKmer), count(kdb.count), kmerDBName(kdb.kmerDBName), kmerLocations(kdb.kmerLocations), Database(kdb) {}
 	KmerDB();
 	~KmerDB();
 	
@@ -35,13 +36,9 @@ public:
 	void readKmerDB(ifstream&);
 	int getCount(int);  //returns number of sequences with that kmer number
 	vector<int> getSequencesWithKmer(int);  //returns vector of sequences that contain kmer passed in
+	int getReversed(int);  //returns reverse compliment kmerNumber 
 	int getMaxKmer() { return maxKmer; }
 	
-	#ifdef USE_MPI	
-	int MPISend(int); //just sends kmersize
-	int MPIRecv(int);
-	#endif
-	
 private:
 	
 	int kmerSize;