X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=kmerdb.cpp;h=29265933d8c22ea32c1f943a877b3b6cf62ccfe0;hb=0c764f30117bc3ae41413e12071070330c3d6a3d;hp=7f7f26589cf6a5c8a566393db9ec76939eb7c0a9;hpb=74844a60d80c6dd06e3fb02ee9b928424f9019b0;p=mothur.git

diff --git a/kmerdb.cpp b/kmerdb.cpp
index 7f7f265..2926593 100644
--- a/kmerdb.cpp
+++ b/kmerdb.cpp
@@ -48,6 +48,8 @@ KmerDB::KmerDB(string fastaFileName, int kSize) : Database(), kmerSize(kSize) {
 
 }
 /**************************************************************************************************/
+KmerDB::KmerDB() : Database() {}
+/**************************************************************************************************/
 
 KmerDB::~KmerDB(){}
 
@@ -105,7 +107,10 @@ void KmerDB::generateDB(){
 	try {
 		
 		ofstream kmerFile;										//	once we have the kmerLocations folder print it out
-		openOutputFile(kmerDBName, kmerFile);					//	to a file
+		m->openOutputFile(kmerDBName, kmerFile);					//	to a file
+		
+		//output version
+		kmerFile << m->getVersion() << endl;
 		
 		for(int i=0;i<maxKmer;i++){								//	step through all of the possible kmer numbers
 			kmerFile << i << ' ' << kmerLocations[i].size();	//	print the kmer number and the number of sequences with
@@ -154,6 +159,9 @@ void KmerDB::readKmerDB(ifstream& kmerDBFile){
 					
 		kmerDBFile.seekg(0);									//	start at the beginning of the file
 		
+		//read version
+		string line = m->getline(kmerDBFile); m->gobble(kmerDBFile);
+		
 		string seqName;
 		int seqNumber;
 
@@ -204,6 +212,7 @@ vector<int> KmerDB::getSequencesWithKmer(int kmer) {
 		exit(1);
 	}	
 }
+/**************************************************************************************************/
 
 
 /**************************************************************************************************/