X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=kmer.hpp;h=d5b67d66d173cb24c179569d44886f2591ea2530;hb=71c8b7190cf3a4dcedbab0273c938f6f868562bc;hp=75ec5384ad2d3724bc61688616a7eb2ca6c9d252;hpb=20a2d0350a737a434c89f303662d64a8eeea7b05;p=mothur.git

diff --git a/kmer.hpp b/kmer.hpp
index 75ec538..d5b67d6 100644
--- a/kmer.hpp
+++ b/kmer.hpp
@@ -10,6 +10,8 @@
  *
  */
 
+#include "mothur.h"
+
 /**************************************************************************************************/
 
 class Kmer {
@@ -18,11 +20,10 @@ public:
 	Kmer(int);
 	string getKmerString(string);
 	int getKmerNumber(string, int);
-	
-	
-private:
 	string getKmerBases(int);
+	vector< map<int, int> > getKmerCounts(string sequence);  //for use in chimeraCheck
 	
+private:
 	char getASCII(int);
 	int getNumber(char);
 	int kmerSize;
@@ -32,4 +33,5 @@ private:
 
 /**************************************************************************************************/
 
+
 #endif