X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=kaln.h;fp=kaln.h;h=b25dccb32a978ff50659685e84b62f1ed442dffb;hb=168ad095c3483f195ae3e404b3cd1fe949681909;hp=b24597cfc2ee159529c5746916597591ecababe2;hpb=15a0c37188c495ec9d11b437d5d2a34172be6cad;p=samtools.git

diff --git a/kaln.h b/kaln.h
index b24597c..b25dccb 100644
--- a/kaln.h
+++ b/kaln.h
@@ -41,25 +41,16 @@ typedef struct {
 	int band_width;
 } ka_param_t;
 
-typedef struct {
-	float d, e;
-	int bw;
-} ka_probpar_t;
-
 #ifdef __cplusplus
 extern "C" {
 #endif
 
 	uint32_t *ka_global_core(uint8_t *seq1, int len1, uint8_t *seq2, int len2, const ka_param_t *ap,
 							 int *_score, int *n_cigar);
-	int ka_prob_glocal(const uint8_t *_ref, int l_ref, const uint8_t *_query, int l_query, const uint8_t *iqual,
-					   const ka_probpar_t *c, int *state, uint8_t *q);
-
 #ifdef __cplusplus
 }
 #endif
 
 extern ka_param_t ka_param_blast; /* = { 5, 2, 5, 2, aln_sm_blast, 5, 50 }; */
-extern ka_probpar_t ka_probpar_def; /* { 0.0001, 0.1, 10 } */
 
 #endif