X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=kaln.h;fp=kaln.h;h=4b6869c7f71ab67b3257a86c4bcd5dc7bbf2e826;hb=addab0d26aa2f0ea4461bfcacf6304556786408a;hp=b04d8cc0b001c17c20654fc125e392b08aefb343;hpb=07c8d1180fa6b712eb2bc6c86ecb9e6b3dbed87b;p=samtools.git

diff --git a/kaln.h b/kaln.h
index b04d8cc..4b6869c 100644
--- a/kaln.h
+++ b/kaln.h
@@ -33,7 +33,8 @@
 typedef struct {
 	int gap_open;
 	int gap_ext;
-	int gap_end;
+	int gap_end_open;
+	int gap_end_ext;
 
 	int *matrix;
 	int row;
@@ -50,6 +51,6 @@ extern "C" {
 }
 #endif
 
-extern ka_param_t ka_param_blast; /* = {  5,  2,  2, aln_sm_blast, 5, 50 }; */
+extern ka_param_t ka_param_blast; /* = { 5, 2, 5, 2, aln_sm_blast, 5, 50 }; */
 
 #endif