X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=inputdata.h;h=c91720b567838d38ff62379bfbc0fc381356d6de;hb=f07bf12e0d04340698aff7a36d2fee7c959ffe59;hp=abb343e98eb02677006af4316fbc10e4693f3a2a;hpb=58cf1d08fee8c64334979075fa57bcafb035a2ed;p=mothur.git

diff --git a/inputdata.h b/inputdata.h
index abb343e..c91720b 100644
--- a/inputdata.h
+++ b/inputdata.h
@@ -1,17 +1,13 @@
 #ifndef INPUTDATA_H
 #define INPUTDATA_H
 
-#include <iostream>
-#include <iomanip>
-#include <string>
-#include <fstream>
+#include "mothur.h"
 #include "ordervector.hpp"
 #include "sharedlistvector.h"
+#include "sharedordervector.h"
 #include "listvector.hpp"
 
 
-using namespace std;
-
 class InputData {
 	
 public:
@@ -19,9 +15,20 @@ public:
 	InputData(string, string, string);
 	~InputData();
 	ListVector* getListVector();
+	ListVector* getListVector(string);  //pass the label you want
+	ListVector* getListVector(string, bool);  //pass the label you want, reset filepointer
 	SharedListVector* getSharedListVector();
-	OrderVector* getOrderVector();
+	SharedListVector* getSharedListVector(string);  //pass the label you want
+	OrderVector* getOrderVector(); 
+	OrderVector* getOrderVector(string); //pass the label you want
+	SharedOrderVector* getSharedOrderVector();
+	SharedOrderVector* getSharedOrderVector(string);  //pass the label you want
 	SAbundVector* getSAbundVector();
+	SAbundVector* getSAbundVector(string);  //pass the label you want
+	RAbundVector* getRAbundVector();
+	RAbundVector* getRAbundVector(string);  //pass the label you want
+	vector<SharedRAbundVector*> getSharedRAbundVectors();
+	vector<SharedRAbundVector*> getSharedRAbundVectors(string);  //pass the label you want
 	
 private:
 	string format;
@@ -30,8 +37,12 @@ private:
 	ListVector* list;
 	SharedListVector* SharedList;
 	OrderVector* output;
+	SharedOrderVector* SharedOrder;
 	SAbundVector* sabund;
+	RAbundVector* rabund;
 	map<string,int> orderMap;
+	string filename;
+	MothurOut* m;
 };