X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=inputdata.h;h=658b21d8cdfe649d8434e883655ecd18922f2554;hb=a0f1fca79d2ddfa7ad36b4485039c68b5704fe8d;hp=b6912b3c8bef9803dae6aad648f97a80b3844b5b;hpb=09a01fb51eea9e81409d367410c831394193fd86;p=mothur.git

diff --git a/inputdata.h b/inputdata.h
index b6912b3..658b21d 100644
--- a/inputdata.h
+++ b/inputdata.h
@@ -1,18 +1,14 @@
 #ifndef INPUTDATA_H
 #define INPUTDATA_H
 
-#include <iostream>
-#include <iomanip>
-#include <string>
-#include <fstream>
+#include "mothur.h"
 #include "ordervector.hpp"
 #include "sharedlistvector.h"
 #include "sharedordervector.h"
 #include "listvector.hpp"
+#include "sharedrabundfloatvector.h"
 
 
-using namespace std;
-
 class InputData {
 	
 public:
@@ -20,10 +16,22 @@ public:
 	InputData(string, string, string);
 	~InputData();
 	ListVector* getListVector();
+	ListVector* getListVector(string);  //pass the label you want
+	ListVector* getListVector(string, bool);  //pass the label you want, reset filepointer
 	SharedListVector* getSharedListVector();
-	OrderVector* getOrderVector();
+	SharedListVector* getSharedListVector(string);  //pass the label you want
+	OrderVector* getOrderVector(); 
+	OrderVector* getOrderVector(string); //pass the label you want
 	SharedOrderVector* getSharedOrderVector();
+	SharedOrderVector* getSharedOrderVector(string);  //pass the label you want
 	SAbundVector* getSAbundVector();
+	SAbundVector* getSAbundVector(string);  //pass the label you want
+	RAbundVector* getRAbundVector();
+	RAbundVector* getRAbundVector(string);  //pass the label you want
+	vector<SharedRAbundVector*> getSharedRAbundVectors();
+	vector<SharedRAbundVector*> getSharedRAbundVectors(string);  //pass the label you want
+	vector<SharedRAbundFloatVector*> getSharedRAbundFloatVectors();
+	vector<SharedRAbundFloatVector*> getSharedRAbundFloatVectors(string);  //pass the label you want
 	
 private:
 	string format;
@@ -34,7 +42,10 @@ private:
 	OrderVector* output;
 	SharedOrderVector* SharedOrder;
 	SAbundVector* sabund;
+	RAbundVector* rabund;
 	map<string,int> orderMap;
+	string filename;
+	MothurOut* m;
 };