X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=inputdata.h;fp=inputdata.h;h=658b21d8cdfe649d8434e883655ecd18922f2554;hb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;hp=0000000000000000000000000000000000000000;hpb=1b73ff67c83892a025e597dabd9df6fe7b58206a;p=mothur.git

diff --git a/inputdata.h b/inputdata.h
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--- /dev/null
+++ b/inputdata.h
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+#ifndef INPUTDATA_H
+#define INPUTDATA_H
+
+#include "mothur.h"
+#include "ordervector.hpp"
+#include "sharedlistvector.h"
+#include "sharedordervector.h"
+#include "listvector.hpp"
+#include "sharedrabundfloatvector.h"
+
+
+class InputData {
+	
+public:
+	InputData(string, string);
+	InputData(string, string, string);
+	~InputData();
+	ListVector* getListVector();
+	ListVector* getListVector(string);  //pass the label you want
+	ListVector* getListVector(string, bool);  //pass the label you want, reset filepointer
+	SharedListVector* getSharedListVector();
+	SharedListVector* getSharedListVector(string);  //pass the label you want
+	OrderVector* getOrderVector(); 
+	OrderVector* getOrderVector(string); //pass the label you want
+	SharedOrderVector* getSharedOrderVector();
+	SharedOrderVector* getSharedOrderVector(string);  //pass the label you want
+	SAbundVector* getSAbundVector();
+	SAbundVector* getSAbundVector(string);  //pass the label you want
+	RAbundVector* getRAbundVector();
+	RAbundVector* getRAbundVector(string);  //pass the label you want
+	vector<SharedRAbundVector*> getSharedRAbundVectors();
+	vector<SharedRAbundVector*> getSharedRAbundVectors(string);  //pass the label you want
+	vector<SharedRAbundFloatVector*> getSharedRAbundFloatVectors();
+	vector<SharedRAbundFloatVector*> getSharedRAbundFloatVectors(string);  //pass the label you want
+	
+private:
+	string format;
+	ifstream fileHandle;
+	DataVector* input;
+	ListVector* list;
+	SharedListVector* SharedList;
+	OrderVector* output;
+	SharedOrderVector* SharedOrder;
+	SAbundVector* sabund;
+	RAbundVector* rabund;
+	map<string,int> orderMap;
+	string filename;
+	MothurOut* m;
+};
+
+
+#endif