X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=inputdata.cpp;h=b237bb4fc55b0bacafa3815f9619f0345bd31492;hb=753dc84cf289b1d5dc0ca5b0c043640927aa951a;hp=2c249e6a4a42b89a93b48a4252c60613f40fae9f;hpb=d59f91eb1230d2c7867a92cb86138b7003100ab4;p=mothur.git

diff --git a/inputdata.cpp b/inputdata.cpp
index 2c249e6..b237bb4 100644
--- a/inputdata.cpp
+++ b/inputdata.cpp
@@ -24,7 +24,7 @@ InputData::InputData(string fName, string f) : format(f){
 
 
 InputData::~InputData(){
-	
+	fileHandle.close();
 //	delete output;
 	
 }
@@ -183,14 +183,14 @@ OrderVector* InputData::getOrderVector(){
 	}	
 }
 /***********************************************************************/
-
+//this is used when you don't need the order vector
 vector<SharedRAbundVector*> InputData::getSharedRAbundVectors(){
 	try {
 		if(fileHandle){
 			if (format == "sharedfile")  {
-				SharedOrder = new SharedOrderVector(fileHandle);
-				if (SharedOrder != NULL) {
-					return SharedOrder->getSharedRAbundVector();
+				SharedRAbundVector* SharedRAbund = new SharedRAbundVector(fileHandle);
+				if (SharedRAbund != NULL) {
+					return SharedRAbund->getSharedRAbundVectors();
 				}
 			}else if (format == "shared") {
 				SharedList = new SharedListVector(fileHandle);
@@ -216,6 +216,7 @@ vector<SharedRAbundVector*> InputData::getSharedRAbundVectors(){
 	}	
 }
 
+
 /***********************************************************************/
 
 SAbundVector* InputData::getSAbundVector(){