X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=indicatorcommand.h;h=c5112e683dbf78a074aa1df6c1978d3b1fb0756d;hb=2bb9267aa4b4ecdf8488b06605cc9f3f36fa4332;hp=aa3156298a1a729f416bb793e60b7739c39843d1;hpb=cd7040a22ae19c86a13c2c10ed90a64b77a0c482;p=mothur.git

diff --git a/indicatorcommand.h b/indicatorcommand.h
index aa31562..c5112e6 100644
--- a/indicatorcommand.h
+++ b/indicatorcommand.h
@@ -39,7 +39,7 @@ private:
 	GroupMap* designMap;
 	string treefile, sharedfile, relabundfile, groups, label, inputFileName, outputDir, designfile;
 	bool abort;
-	int iters;
+	int iters, processors;
 	vector<string> outputNames, Groups;
 	vector<SharedRAbundVector*> lookup;
 	vector<SharedRAbundFloatVector*> lookupFloat;
@@ -54,6 +54,11 @@ private:
 	map<int, float> getDistToRoot(Tree*&);
 	map< vector<int>, vector<int> > randomizeGroupings(vector< vector<SharedRAbundVector*> >&, int);
 	map< vector<int>, vector<int> > randomizeGroupings(vector< vector<SharedRAbundFloatVector*> >&, int);
+	vector<float> driver(vector< vector<SharedRAbundFloatVector*> >&, map< vector<int>, vector<int> >, int, vector<float>, int);
+	vector<float> driver(vector< vector<SharedRAbundVector*> >&, map< vector<int>, vector<int> >, int, vector<float>, int);
+	vector<float> getPValues(vector< vector<SharedRAbundFloatVector*> >&, map< vector<int>, vector<int> >, int, vector<float>);
+	vector<float> getPValues(vector< vector<SharedRAbundVector*> >&, map< vector<int>, vector<int> >, int, vector<float>);
+
 	
 };