X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=indicatorcommand.h;fp=indicatorcommand.h;h=00694bea297688fc57804fc4ab41b61287e798d0;hb=a44542a3c740cf957cff72ac71742f2fe48b0eaf;hp=578aa95cbd6ebd773e6595c875ef487fe4a6861b;hpb=f2408a11ad53c148e3a3329018ca7d04b567f11d;p=mothur.git diff --git a/indicatorcommand.h b/indicatorcommand.h index 578aa95..00694be 100644 --- a/indicatorcommand.h +++ b/indicatorcommand.h @@ -28,7 +28,8 @@ public: string getCommandCategory() { return "Hypothesis Testing"; } string getHelpString(); string getCitation() { return "Dufrene M, Legendre P (1997). Species assemblages and indicator species: The need for a flexible asymmetrical approach. Ecol Monogr 67: 345-66.\n McCune B, Grace JB, Urban DL (2002). Analysis of ecological communities. MjM Software Design: Gleneden Beach, OR. \nLegendre P, Legendre L (1998). Numerical Ecology. Elsevier: New York. \nhttp://www.mothur.org/wiki/Indicator"; } - + string getDescription() { return "calculate the indicator value for each OTU for each tree node"; } + int execute(); void help() { m->mothurOut(getHelpString()); }