X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=homovacommand.h;h=9398627105ad53f7644c47a0db4b0e969f77862f;hb=51f21ea4aea22d0c574f6db749c9b3ae7793f765;hp=8b31cc5a65aeedfc63412c5bc200faf6ce8fb603;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git

diff --git a/homovacommand.h b/homovacommand.h
index 8b31cc5..9398627 100644
--- a/homovacommand.h
+++ b/homovacommand.h
@@ -26,9 +26,11 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "homova";					}
 	string getCommandCategory()		{ return "Hypothesis Testing";		}
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
-	string getCitation() { return "Stewart CN, Excoffier L (1996). Assessing population genetic structure and variability with RAPD data: Application to Vaccinium macrocarpon (American Cranberry). J Evol Biol 9: 153-71. http://www.mothur.org/wiki/Homova"; }
-	
+	string getCitation() { return "Stewart CN, Excoffier L (1996). Assessing population genetic structure and variability with RAPD data: Application to Vaccinium macrocarpon (American Cranberry). J Evol Biol 9: 153-71. \nhttp://www.mothur.org/wiki/Homova"; }
+	string getDescription()		{ return "homova"; }
+
 	int execute();
 	void help() { m->mothurOut(getHelpString()); }	
 	
@@ -39,7 +41,7 @@ private:
 	map<string, vector<int> > getRandomizedGroups(map<string, vector<int> >);
 
 	bool abort;
-	vector<string> outputNames;
+	vector<string> outputNames, Sets;
 
 	string outputDir, inputDir, designFileName, phylipFileName;
 	GroupMap* designMap;