X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=helpcommand.cpp;h=040327638318b271b72276671adb17ad1cc4a75e;hb=bbdb72971ea4cd171abe34985af89f97bc2a31d3;hp=e0ef2a3ebdf20de0d8a7e3ede3ad4a5f14857da1;hpb=a5afca18544555fba2d9c3670ad1f8574916b0a0;p=mothur.git

diff --git a/helpcommand.cpp b/helpcommand.cpp
index e0ef2a3..0403276 100644
--- a/helpcommand.cpp
+++ b/helpcommand.cpp
@@ -11,10 +11,7 @@
 
 //**********************************************************************************************************************
 
-HelpCommand::HelpCommand(string option){
-
-	
-	if (option != "") { mothurOut("There are no valid parameters for the help() command."); mothurOutEndLine();  }
+HelpCommand::HelpCommand(string option)  {
 	
 	validCommands = CommandFactory::getInstance();
 }
@@ -26,11 +23,10 @@ HelpCommand::~HelpCommand(){}
 //**********************************************************************************************************************
 
 int HelpCommand::execute(){
-
 	validCommands->printCommands(cout);
-	mothurOut("For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'"); mothurOutEndLine();
+	m->mothurOut("For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'"); m->mothurOutEndLine();
 	
-	mothurOutEndLine(); mothurOut("For further assistance please refer to the Mothur manual on our wiki at http://www.mothur.org/wiki, or contact Pat Schloss at mothur.bugs@gmail.com.\n");
+	m->mothurOutEndLine(); m->mothurOut("For further assistance please refer to the Mothur manual on our wiki at http://www.mothur.org/wiki, or contact Pat Schloss at mothur.bugs@gmail.com.\n");
 	return 0;
 }