X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=helpcommand.cpp;fp=helpcommand.cpp;h=608ff3e275a1c7240975b506961d3a7ecf78fa79;hb=74844a60d80c6dd06e3fb02ee9b928424f9019b0;hp=948c31760a6ace11e2eba806c46d44e9f89f6719;hpb=a218321731df14d231bbc08e79906f757cf1540d;p=mothur.git

diff --git a/helpcommand.cpp b/helpcommand.cpp
index 948c317..608ff3e 100644
--- a/helpcommand.cpp
+++ b/helpcommand.cpp
@@ -11,7 +11,7 @@
 
 //**********************************************************************************************************************
 
-HelpCommand::HelpCommand(string option){
+HelpCommand::HelpCommand(string option)  {
 	
 	validCommands = CommandFactory::getInstance();
 }
@@ -25,9 +25,9 @@ HelpCommand::~HelpCommand(){}
 int HelpCommand::execute(){
 
 	validCommands->printCommands(cout);
-	mothurOut("For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'"); mothurOutEndLine();
+	m->mothurOut("For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'"); m->mothurOutEndLine();
 	
-	mothurOutEndLine(); mothurOut("For further assistance please refer to the Mothur manual on our wiki at http://www.mothur.org/wiki, or contact Pat Schloss at mothur.bugs@gmail.com.\n");
+	m->mothurOutEndLine(); m->mothurOut("For further assistance please refer to the Mothur manual on our wiki at http://www.mothur.org/wiki, or contact Pat Schloss at mothur.bugs@gmail.com.\n");
 	return 0;
 }