X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=helpcommand.cpp;fp=helpcommand.cpp;h=47d04f9d528ab14053f468f2eacc7e150db736c0;hb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;hp=0000000000000000000000000000000000000000;hpb=1b73ff67c83892a025e597dabd9df6fe7b58206a;p=mothur.git

diff --git a/helpcommand.cpp b/helpcommand.cpp
new file mode 100644
index 0000000..47d04f9
--- /dev/null
+++ b/helpcommand.cpp
@@ -0,0 +1,32 @@
+/*
+ *  helpcommand.cpp
+ *  Dotur
+ *
+ *  Created by Sarah Westcott on 1/2/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+#include "helpcommand.h"
+
+//**********************************************************************************************************************
+
+HelpCommand::HelpCommand(string option)  {	
+	validCommands = CommandFactory::getInstance();	
+}
+//**********************************************************************************************************************
+int HelpCommand::execute(){
+	try {
+		validCommands->printCommands(cout);
+		m->mothurOut("For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'"); m->mothurOutEndLine();
+	
+		m->mothurOutEndLine(); m->mothurOut("For further assistance please refer to the Mothur manual on our wiki at http://www.mothur.org/wiki, or contact Pat Schloss at mothur.bugs@gmail.com.\n");
+	
+		return 0;
+	}
+	catch(exception& e) {
+		m->errorOut(e, "HelpCommand", "execute");
+		exit(1);
+	}
+}
+//**********************************************************************************************************************/