X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=heatmapsimcommand.h;h=cd12c176f44994e4ea1da4128737dabe2931b6ac;hb=3247d888e7aafc4a65ec9062a94dfd166c2c5b1d;hp=49924eb9d3fbe1bca2bd6a8650c0eb9586d98e6f;hpb=d5bf2c1354d0811a33394d918b15620606560d58;p=mothur.git

diff --git a/heatmapsimcommand.h b/heatmapsimcommand.h
index 49924eb..cd12c17 100644
--- a/heatmapsimcommand.h
+++ b/heatmapsimcommand.h
@@ -22,7 +22,12 @@ class HeatMapSimCommand : public Command {
 
 public:
 	HeatMapSimCommand(string);
+	HeatMapSimCommand();
 	~HeatMapSimCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
 	void help();
 	
@@ -39,8 +44,9 @@ private:
 	map<string, string>::iterator it;
 	bool abort, allLines;
 	set<string> labels; //holds labels to be used
-	string format, groups, label, calc, phylipfile, columnfile, namefile;
-	vector<string> Estimators, Groups;
+	string format, groups, label, calc, phylipfile, columnfile, namefile, outputDir;
+	vector<string> Estimators, Groups, outputNames;
+	map<string, vector<string> > outputTypes;
 	
 	int runCommandShared();
 	int runCommandDist();