X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=heatmapsimcommand.h;fp=heatmapsimcommand.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=74e20bebb35863128f72c3d85a8398c87ad9a5b2;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/heatmapsimcommand.h b/heatmapsimcommand.h
deleted file mode 100644
index 74e20be..0000000
--- a/heatmapsimcommand.h
+++ /dev/null
@@ -1,56 +0,0 @@
-#ifndef HEATMAPSIMCOMMAND_H
-#define HEATMAPSIMCOMMAND_H
-
-/*
- *  heatmapsimcommand.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 6/8/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "command.hpp"
-#include "inputdata.h"
-#include "validcalculator.h"
-#include "heatmapsim.h"
-#include "nameassignment.hpp"
-
-class HeatMapSimCommand : public Command {
-
-public:
-	HeatMapSimCommand(string);
-	HeatMapSimCommand();
-	~HeatMapSimCommand(){}
-	
-	vector<string> setParameters();
-	string getCommandName()			{ return "heatmap.sim";				}
-	string getCommandCategory()		{ return "OTU-Based Approaches";	}
-	string getHelpString();	
-	string getCitation() { return "http://www.mothur.org/wiki/Heatmap.sim"; }
-	string getDescription()		{ return "generate a heatmap indicating the pairwise distance between multiple samples using a variety of calculators"; }
-
-	int execute(); 
-	void help() { m->mothurOut(getHelpString()); }	
-	
-	
-private:
-	InputData* input;
-	vector<SharedRAbundVector*> lookup;
-	vector<Calculator*> heatCalculators;
-	HeatMapSim* heatmap;
-	OptionParser* parser;
-	bool abort, allLines;
-	set<string> labels; //holds labels to be used
-	string format, groups, label, calc, sharedfile, phylipfile, columnfile, namefile, outputDir, inputfile;
-	vector<string> Estimators, Groups, outputNames;
-	int fontsize;
-	
-	int runCommandShared();
-	int runCommandDist();
-
-
-};
-
-#endif
-