X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=heatmapsim.cpp;h=b29e98b68c4af0824d4effbffa753ede522309c7;hb=315e38cf393c82be238da5b32574f225a020d25c;hp=c68d0cc413855650efc86f2370ad7ab82508e6b7;hpb=5b9b3e01150055e3b4bb1a911ea4c61d0b755e89;p=mothur.git

diff --git a/heatmapsim.cpp b/heatmapsim.cpp
index c68d0cc..b29e98b 100644
--- a/heatmapsim.cpp
+++ b/heatmapsim.cpp
@@ -20,7 +20,7 @@
 #include "sharedbraycurtis.h"
 
 //**********************************************************************************************************************
-HeatMapSim::HeatMapSim(){
+HeatMapSim::HeatMapSim(string dir) : outputDir(dir) {
 		globaldata = GlobalData::getInstance();
 }
 //**********************************************************************************************************************
@@ -32,7 +32,7 @@ void HeatMapSim::getPic(vector<SharedRAbundVector*> lookup, vector<Calculator*>
 		//make file for each calculator selected
 		for (int m = 0; m < calcs.size(); m++) {
 			
-			string filenamesvg = getRootName(globaldata->inputFileName) + lookup[0]->getLabel() + calcs[m]->getName() + ".heatmap.sim.svg";
+			string filenamesvg = outputDir + getRootName(getSimpleName(globaldata->inputFileName)) + lookup[0]->getLabel() + calcs[m]->getName() + ".heatmap.sim.svg";
 			openOutputFile(filenamesvg, outsvg);
 			
 			//svg image
@@ -107,7 +107,7 @@ void HeatMapSim::getPic(vector< vector<double> > dists, vector<string> groups) {
 		
 		vector<double> sims;
 		
-		string filenamesvg = getRootName(globaldata->inputFileName) + "heatmap.sim.svg";
+		string filenamesvg = outputDir + getRootName(getSimpleName(globaldata->inputFileName)) + "heatmap.sim.svg";
 		openOutputFile(filenamesvg, outsvg);
 			
 		//svg image