X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=heatmapcommand.h;h=a85d510074c55a73adc25b07f16a8a81bdd4a30c;hb=995238e9aa4455e3b59053e3dfe497b89caed79e;hp=2ae9882db4ff0c5390293cdfd6ea0e2b2c496c11;hpb=0470f6d037aacb3563c3f7010708120a4a67d4e6;p=mothur.git

diff --git a/heatmapcommand.h b/heatmapcommand.h
index 2ae9882..a85d510 100644
--- a/heatmapcommand.h
+++ b/heatmapcommand.h
@@ -24,7 +24,12 @@ class HeatMapCommand : public Command {
 
 public:
 	HeatMapCommand(string);
+	HeatMapCommand();
 	~HeatMapCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
 	void help();
 	
@@ -35,15 +40,15 @@ private:
 	SharedListVector* SharedList;
 	RAbundVector* rabund;
 	vector<SharedRAbundVector*> lookup;
+	vector<SharedRAbundFloatVector*> lookupFloat;
 	HeatMap* heatmap;
-	OptionParser* parser;
-	map<string, string> parameters;
-	map<string, string>::iterator it;
+
 	bool abort, allLines;
-	set<int> lines; //hold lines to be used
 	set<string> labels; //holds labels to be used
-	string format, groups, sorted, scale, line, label;
-	vector<string> Groups;
+	string format, groups, sorted, scale, label, outputDir;
+	vector<string> Groups, outputNames;
+	map<string, vector<string> > outputTypes;
+	int numOTU, fontSize;
 
 
 };