X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=heatmapcommand.h;fp=heatmapcommand.h;h=2ae9882db4ff0c5390293cdfd6ea0e2b2c496c11;hb=0470f6d037aacb3563c3f7010708120a4a67d4e6;hp=fc50554c601c3c897f949775de7743c94cf33c9a;hpb=bede5752eaeedb5a7e339439b6ba2f6670bca2b9;p=mothur.git

diff --git a/heatmapcommand.h b/heatmapcommand.h
index fc50554..2ae9882 100644
--- a/heatmapcommand.h
+++ b/heatmapcommand.h
@@ -23,9 +23,10 @@ class GlobalData;
 class HeatMapCommand : public Command {
 
 public:
-	HeatMapCommand();
+	HeatMapCommand(string);
 	~HeatMapCommand();
 	int execute();
+	void help();
 	
 private:
 	GlobalData* globaldata;
@@ -35,7 +36,15 @@ private:
 	RAbundVector* rabund;
 	vector<SharedRAbundVector*> lookup;
 	HeatMap* heatmap;
-	string format;
+	OptionParser* parser;
+	map<string, string> parameters;
+	map<string, string>::iterator it;
+	bool abort, allLines;
+	set<int> lines; //hold lines to be used
+	set<string> labels; //holds labels to be used
+	string format, groups, sorted, scale, line, label;
+	vector<string> Groups;
+
 
 };