X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=heatmapcommand.h;fp=heatmapcommand.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=ccd5f4868e9061ed61e4a90ae042ae6bded4fa68;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/heatmapcommand.h b/heatmapcommand.h
deleted file mode 100644
index ccd5f48..0000000
--- a/heatmapcommand.h
+++ /dev/null
@@ -1,57 +0,0 @@
-#ifndef HEATMAPCOMMAND_H
-#define HEATMAPCOMMAND_H
-
-/*
- *  heatmapcommand.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 3/25/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-
-#include "command.hpp"
-#include "inputdata.h"
-#include "sharedlistvector.h"
-#include "heatmap.h"
-#include "rabundvector.hpp"
-
-
-class HeatMapCommand : public Command {
-
-public:
-	HeatMapCommand(string);
-	HeatMapCommand();
-	~HeatMapCommand(){}
-	
-	vector<string> setParameters();
-	string getCommandName()			{ return "heatmap.bin";				}
-	string getCommandCategory()		{ return "OTU-Based Approaches";	}
-	string getHelpString();	
-	string getCitation() { return "http://www.mothur.org/wiki/Heatmap.bin"; }
-	string getDescription()		{ return "generate a heatmap where the color represents the relative abundanceof an OTU"; }
-
-	
-	int execute(); 
-	void help() { m->mothurOut(getHelpString()); }	
-	
-	
-private:
-	InputData* input;
-	RAbundVector* rabund;
-	vector<SharedRAbundVector*> lookup;
-	vector<SharedRAbundFloatVector*> lookupFloat;
-	HeatMap* heatmap;
-
-	bool abort, allLines;
-	set<string> labels; //holds labels to be used
-	string format, groups, sorted, scale, label, outputDir, sharedfile, relabundfile, listfile, rabundfile, sabundfile, inputfile;
-	vector<string> Groups, outputNames;
-	int numOTU, fontSize;
-
-
-};
-
-#endif
-