X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=heatmapcommand.cpp;h=441eaf8a4dc4e77beb36c7e39c102f9aa13f0d53;hb=006601d68abe8d0061f77e8d28323b160750e343;hp=d160525c70174131e8d32ac9803f5bcc756cb80f;hpb=f687723a8357916e86a05116978e6869b039ce36;p=mothur.git diff --git a/heatmapcommand.cpp b/heatmapcommand.cpp index d160525..441eaf8 100644 --- a/heatmapcommand.cpp +++ b/heatmapcommand.cpp @@ -173,27 +173,27 @@ HeatMapCommand::HeatMapCommand(string option) { //check for required parameters listfile = validParameter.validFile(parameters, "list", true); - if (listfile == "not open") { listfile = ""; abort = true; } + if (listfile == "not open") { abort = true; } else if (listfile == "not found") { listfile = ""; } else { format = "list"; inputfile = listfile; m->setListFile(listfile); } sabundfile = validParameter.validFile(parameters, "sabund", true); - if (sabundfile == "not open") { sabundfile = ""; abort = true; } + if (sabundfile == "not open") { abort = true; } else if (sabundfile == "not found") { sabundfile = ""; } else { format = "sabund"; inputfile = sabundfile; m->setSabundFile(sabundfile); } rabundfile = validParameter.validFile(parameters, "rabund", true); - if (rabundfile == "not open") { rabundfile = ""; abort = true; } + if (rabundfile == "not open") { abort = true; } else if (rabundfile == "not found") { rabundfile = ""; } else { format = "rabund"; inputfile = rabundfile; m->setRabundFile(rabundfile); } sharedfile = validParameter.validFile(parameters, "shared", true); - if (sharedfile == "not open") { sharedfile = ""; abort = true; } + if (sharedfile == "not open") { abort = true; } else if (sharedfile == "not found") { sharedfile = ""; } else { format = "sharedfile"; inputfile = sharedfile; m->setSharedFile(sharedfile); } relabundfile = validParameter.validFile(parameters, "relabund", true); - if (relabundfile == "not open") { relabundfile = ""; abort = true; } + if (relabundfile == "not open") { abort = true; } else if (relabundfile == "not found") { relabundfile = ""; } else { format = "relabund"; inputfile = relabundfile; m->setRelAbundFile(relabundfile); }