X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=hclustercommand.h;h=6bf559ae6937f130679a5b601e939d7b79193acc;hb=f509429e06e545bde69c97cacc0eb436775bd329;hp=9241e94c35441e1b0d09d3bddae9a76d8f6c4cc6;hpb=0e051b4cfda410b0d441da6ff2f96d4bbe1d9e5a;p=mothur.git

diff --git a/hclustercommand.h b/hclustercommand.h
index 9241e94..6bf559a 100644
--- a/hclustercommand.h
+++ b/hclustercommand.h
@@ -38,8 +38,11 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "hcluster";	}
 	string getCommandCategory()		{ return "Clustering";	}
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
-	
+	string getCitation() { return "Sun Y, Cai Y, Liu L, Yu F, Farrell ML, Mckendree W, Farmerie W (2009). ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences. Nucleic Acids Res 37: e76. \nhttp://www.mothur.org/wiki/Hcluster"; }
+	string getDescription()		{ return "cluster your sequences into OTUs using a distance matrix"; }
+
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }