X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=hcluster.cpp;fp=hcluster.cpp;h=259036f0f02a42beb95926f9ce59a4140164840e;hb=832d53a9dfac6b1795735eec643d8cf627b0d8e3;hp=3b972c0e3cc91c15b4730db6ae837ec621b8d651;hpb=e1cf60b82a48d4d96e3a696a2d221c56cfb0b298;p=mothur.git

diff --git a/hcluster.cpp b/hcluster.cpp
index 3b972c0..259036f 100644
--- a/hcluster.cpp
+++ b/hcluster.cpp
@@ -27,7 +27,9 @@ HCluster::HCluster(RAbundVector* rav, ListVector* lv, string m, string d, NameAs
 		
 		if (method != "average") {
 			openInputFile(distfile, filehandle);
-		}else{ firstRead = true; }
+		}else{  
+			processFile();  
+		}
 	}
 	catch(exception& e) {
 		errorOut(e, "HCluster", "HCluster");
@@ -358,7 +360,6 @@ vector<seqDist> HCluster::getSeqs(){
 		if(method != "average") {
 			sameSeqs = getSeqsFNNN();
 		}else{
-			if (firstRead) {	processFile();   }
 			sameSeqs = getSeqsAN();	
 		}
 				
@@ -755,8 +756,6 @@ void HCluster::processFile() {
 		
 		remove(distfile.c_str());
 		rename(outTemp.c_str(), distfile.c_str());
-		
-		firstRead = false;
 	}
 	catch(exception& e) {
 		errorOut(e, "HCluster", "processFile");